mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-10-21 11:43:11 -04:00
79 lines
1.6 KiB
Nix
79 lines
1.6 KiB
Nix
{
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lib,
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buildPythonPackage,
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fetchFromGitHub,
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pythonOlder,
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pytestCheckHook,
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numpy,
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pillow,
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pillow-jpls,
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pydicom,
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pylibjpeg,
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pylibjpeg-libjpeg,
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}:
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let
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test_data = fetchFromGitHub {
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owner = "pydicom";
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repo = "pydicom-data";
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rev = "cbb9b2148bccf0f550e3758c07aca3d0e328e768";
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hash = "sha256-nF/j7pfcEpWHjjsqqTtIkW8hCEbuQ3J4IxpRk0qc1CQ=";
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};
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in
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buildPythonPackage rec {
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pname = "highdicom";
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version = "0.22.0";
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pyproject = true;
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disabled = pythonOlder "3.6";
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src = fetchFromGitHub {
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owner = "MGHComputationalPathology";
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repo = "highdicom";
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rev = "refs/tags/v${version}";
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hash = "sha256-KHSJWEnm8u0xHkeeLF/U7MY4FfiWb6Q0GQQy2w1mnKw=";
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};
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propagatedBuildInputs = [
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numpy
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pillow
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pillow-jpls
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pydicom
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];
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passthru.optional-dependencies = {
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libjpeg = [
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pylibjpeg
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pylibjpeg-libjpeg
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#pylibjpeg-openjpeg # not in nixpkgs yet
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];
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};
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nativeCheckInputs = [ pytestCheckHook ] ++ passthru.optional-dependencies.libjpeg;
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preCheck = ''
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export HOME=$TMP/test-home
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mkdir -p $HOME/.pydicom/
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ln -s ${test_data}/data_store/data $HOME/.pydicom/data
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'';
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pythonImportsCheck = [
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"highdicom"
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"highdicom.legacy"
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"highdicom.ann"
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"highdicom.ko"
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"highdicom.pm"
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"highdicom.pr"
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"highdicom.seg"
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"highdicom.sr"
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"highdicom.sc"
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];
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meta = with lib; {
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description = "High-level DICOM abstractions for Python";
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homepage = "https://highdicom.readthedocs.io";
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changelog = "https://github.com/ImagingDataCommons/highdicom/releases/tag/v${version}";
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license = licenses.mit;
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maintainers = with maintainers; [ bcdarwin ];
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};
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}
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